It sounds like you are on the home stretch. I have recently started on the Stuart triple expansion. Despite it being my first metal working project and a very steep learning curve, I have set very high standards. After making the 8 columns, I figured I might as well dive in deep and make the crankshaft, which I just completed yesterday. If the rest of the parts come out so well, I'll be elated.
As for fixing the reversing shift levers (part 32) to the reverse shaft (part 54), i believe Stuart specifies 4 taper pins, which are listed on the parts list directly below the reverse shaft. If you have the Model Engineer magazines, it shows drilling for the pins with a long drill bit after everything is assembled and alignment has been sorted out. IMHO, there should not need to adjust these after the fact. I have seen some poorly built engines fixing them with set screws and bolts, which doesn't look too good, and unless a dimple is machined into the shaft, I would think they would almost certainly slip. Using a press fit might also be a problem for the two shift levers that are in the middle of the long shaft.
Hope this helps, and please post photos as there is much I am learning from each one I see.